web-code version: 2019-11-04
database version: 27.01
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Genomicus 27.01 contains 1040086 genes from 27 extant species. This data was analysed with a new method called AGORA (Algorithm for Gene Order Reconstruction in Ancestors; Muffato et al. in preparation) to identify 810245 ancestral genes from 17 ancestral species, grouped into 0 blocks of collinear genes.

The following tables present statistics on the data used in Genomicus, and on the reconstructed blocks in the ancestral species.

1. For extant species, a "contig" means a segment of the genome sequence assembly (chromosomes, scaffolds, contig) with at least two genes.
2. The average block length, the N25, N50 and N75 values do not take into account the singletons (blocks of one gene).

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Plants	Age	Genes	Contigs	Average size (nb genes)	N50 size (nb genes)	Genes not in contigs	Coverage (%)
ANACO	(extant sp.)	27024	652	40.4	923	670	97.5%
ARATH	(extant sp.)	27655	7	3950.7	5460	0	100.0%
BRAPG	(extant sp.)	45863	1032	34.4	7167	10356	77.4%
COCNU	(extant sp.)	29486	19	1551.9	1709	0	100.0%
DIOAL	(extant sp.)	21728	2013	9.7	19	2274	89.5%
ELAGV	(extant sp.)	26295	571	42.8	1144	1847	93.0%
EUCGR	(extant sp.)	36349	435	81.6	3287	867	97.6%
GOSRA	(extant sp.)	37505	71	527.4	2768	62	99.8%
MISSI	(extant sp.)	67789	1220	54.8	3346	929	98.6%
MUSAC	(extant sp.)	35276	24	1469.8	3215	0	100.0%
MUSBA	(extant sp.)	33021	261	126.1	2977	117	99.6%
OROTH	(extant sp.)	28446	423	67.1	391	50	99.8%
ORYBR	(extant sp.)	32038	130	245.8	2613	80	99.8%
ORYSI	(extant sp.)	37549	12	3129.1	3117	0	100.0%
ORYSJ	(extant sp.)	42189	14	3013.5	3495	0	100.0%
PANHL	(extant sp.)	33805	36	937.8	4392	43	99.9%
PANVG	(extant sp.)	91838	1206	73.8	5133	2828	96.9%
PHAEQ	(extant sp.)	20081	1318	12.9	49	3045	84.8%
PHODC	(extant sp.)	25698	1421	16.8	47	1860	92.8%
POPTR	(extant sp.)	42950	294	145.7	2339	121	99.7%
SACHY	(extant sp.)	25316	186	136.0	2791	18	99.9%
SETIT	(extant sp.)	34584	33	1046.5	4096	49	99.9%
SETVI	(extant sp.)	38334	10	3833.4	4611	0	100.0%
SORBI	(extant sp.)	34211	25	1365.7	3784	69	99.8%
VITVI	(extant sp.)	26346	33	798.4	1289	0	100.0%
WHEAT	(extant sp.)	99386	10426	2.2	2	76284	23.2%
ZEAMA	(extant sp.)	39324	63	623.5	4115	43	99.9%