Root species for Sh09_t019710 (Sh09_p019710) (SACHY) | AlignView depth | PhyloView depth | |
---|---|---|---|
Viridiplantae | ~10 Mya | 44 species | 979 homologs (oldest homol. - dupl. node) 557 homologs (dupl. node) 549 homologs (dupl. node) 536 homologs (dupl. node) 528 homologs (dupl. node) 519 homologs (dupl. node) 495 homologs (dupl. node) 487 homologs (dupl. node) 479 homologs (dupl. node) 428 homologs (dupl. node) 422 homologs (dupl. node) 373 homologs (dupl. node) 332 homologs (dupl. node) 96 homologs (dupl. node) 90 homologs (dupl. node) 43 homologs |
Monocotyledons | ~10 Mya | 36 species | 39 homologs |
Commelinids | ~10 Mya | 33 species | 38 homologs |
Poales | ~10 Mya | 24 species | 37 homologs |
Poaceae | ~10 Mya | 22 species | 36 homologs |
Panicoideae | ~10 Mya | 11 species | 16 homologs |
Andropogoneae | ~10 Mya | 5 species | 5 homologs |
SACHY | ~0 Mya | 1 species | 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'