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Genomicus v27.01 Title

web-code version: 2019-11-04
database version: 27.01
Tweets by South Green

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Sh09_t019710 (Sh09_p019710) (SACHY) AlignView depth PhyloView depth
Viridiplantae Viridiplantae ~10 Mya 44 species 979 homologs (oldest homol. - dupl. node)
557 homologs (dupl. node)
549 homologs (dupl. node)
536 homologs (dupl. node)
528 homologs (dupl. node)
519 homologs (dupl. node)
495 homologs (dupl. node)
487 homologs (dupl. node)
479 homologs (dupl. node)
428 homologs (dupl. node)
422 homologs (dupl. node)
373 homologs (dupl. node)
332 homologs (dupl. node)
96 homologs (dupl. node)
90 homologs (dupl. node)
43 homologs
Monocotyledons Monocotyledons ~10 Mya 36 species 39 homologs
Commelinids Commelinids ~10 Mya 33 species 38 homologs
Poales Poales ~10 Mya 24 species 37 homologs
Poaceae Poaceae ~10 Mya 22 species 36 homologs
Panicoideae Panicoideae ~10 Mya 11 species 16 homologs
Andropogoneae Andropogoneae ~10 Mya 5 species 5 homologs
SACHY SACHY ~0 Mya 1 species 2 homologs (dupl. node)
1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'