web-code version: 2019-11-04
database version: 27.01
Tweets by South Green
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| Root species for Sh06_t014600 (Sh06_p014600) (SACHY) | AlignView depth | PhyloView depth | |
|---|---|---|---|
| Viridiplantae |  ~10 Mya |
44 species  |
217 homologs (oldest homol. - dupl. node) 201 homologs |
| Monocotyledons |  ~10 Mya |
36 species |
187 homologs (dupl. node) 178 homologs (dupl. node) 160 homologs (dupl. node) 129 homologs |
| Commelinids |  ~10 Mya |
33 species |
125 homologs |
| Poales |  ~10 Mya |
24 species |
109 homologs (dupl. node) 75 homologs |
| Poaceae |  ~10 Mya |
22 species |
71 homologs (dupl. node) 39 homologs |
| Panicoideae |  ~10 Mya |
11 species |
24 homologs (dupl. node) 21 homologs (dupl. node) 10 homologs |
| Andropogoneae |  ~10 Mya |
5 species |
7 homologs (dupl. node) 5 homologs (dupl. node) 3 homologs |
| SACHY |  ~0 Mya |
1 species |
1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'
