Genomicus v27.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for Sh01_t005870 (Sh01_p005870) (SACHY)		AlignView depth	PhyloView depth
Viridiplantae	~10 Mya	44 species	40 homologs (oldest homol. - dupl. node) 23 homologs
Monocotyledons	~10 Mya	36 species	22 homologs
Commelinids	~10 Mya	33 species	21 homologs
Poales	~10 Mya	24 species	20 homologs
Poaceae	~10 Mya	22 species	19 homologs
Panicoideae	~10 Mya	11 species	13 homologs
Andropogoneae	~10 Mya	5 species	8 homologs (dupl. node) 6 homologs (dupl. node) 4 homologs
SACHY	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'